Frustratometer
latest
Contents:
Frustratometer
Installation
AWSEM Frustratometer examples
Frustratometer classes
Frustratometer Functions
Frustratometer
Index
Edit on GitHub
Index
A
|
C
|
D
|
E
|
F
|
G
|
J
|
L
|
M
|
N
|
P
|
Q
|
R
|
S
|
V
|
W
A
aa_map_awsem_list (frustratometer.AWSEM attribute)
aa_map_awsem_x (frustratometer.AWSEM attribute)
aa_map_awsem_y (frustratometer.AWSEM attribute)
alignment_files_directory (frustratometer.DCA property)
alignment_output_file (frustratometer.DCA property)
alignment_sequence_database (frustratometer.DCA property)
alignment_type (frustratometer.DCA property)
auc() (frustratometer.AWSEM method)
(frustratometer.DCA method)
AWSEM (class in frustratometer)
C
call_vmd() (in module frustratometer.frustration)
canvas() (in module frustratometer.frustration)
chain (frustratometer.DCA property)
compute_aa_freq() (in module frustratometer.frustration)
compute_auc() (in module frustratometer.frustration)
compute_configurational_decoy_energy_fluctuation() (in module frustratometer.frustration)
compute_configurational_decoy_statistics() (frustratometer.AWSEM method)
compute_configurational_energies() (frustratometer.AWSEM method)
compute_contact_decoy_energy_fluctuation() (in module frustratometer.frustration)
compute_contact_freq() (in module frustratometer.frustration)
compute_couplings_energy() (in module frustratometer.frustration)
compute_decoy_energy() (in module frustratometer.frustration)
compute_fields_energy() (in module frustratometer.frustration)
compute_mask() (in module frustratometer.frustration)
compute_mutational_decoy_energy_fluctuation() (in module frustratometer.frustration)
compute_native_energy() (in module frustratometer.frustration)
compute_pair_frustration() (in module frustratometer.frustration)
compute_plm() (in module frustratometer.dca.matlab)
compute_roc() (in module frustratometer.frustration)
compute_scores() (in module frustratometer.frustration)
compute_sequences_energy() (in module frustratometer.frustration)
compute_single_frustration() (in module frustratometer.frustration)
compute_singleresidue_decoy_energy_fluctuation() (in module frustratometer.frustration)
configurational_frustration() (frustratometer.AWSEM method)
copy() (frustratometer.Map method)
couplings_energy() (frustratometer.AWSEM method)
(frustratometer.DCA method)
create_directory() (in module frustratometer.utils)
D
DCA (class in frustratometer)
decoy_energy() (frustratometer.AWSEM method)
(frustratometer.DCA method)
decoy_fluctuation() (frustratometer.AWSEM method)
(frustratometer.DCA method)
distance_cutoff (frustratometer.DCA property)
distance_matrix_method (frustratometer.DCA property)
download() (in module frustratometer.pdb)
download_aligment() (in module frustratometer.pfam)
download_all_alignment_files (frustratometer.DCA property)
download_database() (in module frustratometer.pfam)
E
extract_sequences_from_alignment() (in module frustratometer.align)
F
fields_energy() (frustratometer.AWSEM method)
(frustratometer.DCA method)
filter_alignment() (in module frustratometer.filter)
filter_alignment_lowmem() (in module frustratometer.filter)
from_alignment() (frustratometer.DCA class method)
from_distance_matrix() (frustratometer.DCA class method)
from_hmmer_alignment() (frustratometer.DCA class method)
from_path() (frustratometer.Map class method)
from_pfam_alignment() (frustratometer.DCA class method)
from_potts_model_file() (frustratometer.DCA class method)
from_pottsmodel() (frustratometer.DCA class method)
from_sequences() (frustratometer.Map class method)
frustration() (frustratometer.AWSEM method)
(frustratometer.DCA method)
frustratometer.align
module
frustratometer.dca
module
frustratometer.dca.matlab
module
frustratometer.dca.pydca
module
frustratometer.filter
module
frustratometer.frustration
module
frustratometer.map
module
frustratometer.pdb
module
frustratometer.pfam
module
frustratometer.utils
module
full_pdb() (frustratometer.Structure class method)
full_to_filtered_aligned_mapping() (in module frustratometer.pdb)
G
generate_frustration_pair_distribution() (frustratometer.AWSEM method)
(frustratometer.DCA method)
get_alignment() (in module frustratometer.pfam)
get_distance_matrix() (in module frustratometer.pdb)
get_pfam_map() (in module frustratometer.map)
get_pfamID() (in module frustratometer.map)
(in module frustratometer.utils)
get_sequence() (in module frustratometer.pdb)
J
jackhmmer() (in module frustratometer.align)
L
load_potts_model() (in module frustratometer.dca.matlab)
M
Map (class in frustratometer)
map() (frustratometer.Map method)
map_array (frustratometer.Map property)
mfdca() (in module frustratometer.dca.pydca)
module
frustratometer.align
frustratometer.dca
frustratometer.dca.matlab
frustratometer.dca.pydca
frustratometer.filter
frustratometer.frustration
frustratometer.map
frustratometer.pdb
frustratometer.pfam
frustratometer.utils
N
native_energy() (frustratometer.AWSEM method)
(frustratometer.DCA method)
P
pdb_file (frustratometer.DCA property)
pdb_name (frustratometer.DCA property)
pfamID (frustratometer.DCA property)
plmdca() (in module frustratometer.dca.pydca)
plot_decoy_energy() (frustratometer.AWSEM method)
(frustratometer.DCA method)
plot_roc() (frustratometer.AWSEM method)
(frustratometer.DCA method)
(in module frustratometer.frustration)
plot_singleresidue_decoy_energy() (in module frustratometer.frustration)
potts_model (frustratometer.DCA property)
potts_model_file (frustratometer.DCA property)
Q
q (frustratometer.AWSEM attribute)
R
repair_pdb() (in module frustratometer.pdb)
reverse() (frustratometer.Map method)
roc() (frustratometer.AWSEM method)
(frustratometer.DCA method)
S
scores() (frustratometer.AWSEM method)
(frustratometer.DCA method)
sequence (frustratometer.DCA property)
sequence_cutoff (frustratometer.DCA property)
sequences_energies() (frustratometer.AWSEM method)
(frustratometer.DCA method)
spliced_pdb() (frustratometer.Structure class method)
Structure (class in frustratometer)
V
view_frustration() (frustratometer.AWSEM method)
(frustratometer.DCA method)
vmd() (frustratometer.AWSEM method)
(frustratometer.DCA method)
W
write_tcl_script() (in module frustratometer.frustration)
Read the Docs
v: latest
Versions
latest
Downloads
On Read the Docs
Project Home
Builds